Scaffold Ga0139557_1000066

Overview

Basic Information

• Taxon OID: 3300011010
• Scaffold ID: Ga0139557_1000066
• Source Dataset Name: Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30579
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (25.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 41.825
  • Long. (^o): -82.975

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011226	Metagenome / Metatranscriptome	293	Y
F034850	Metagenome	173	Y
F041184	Metagenome / Metatranscriptome	160	N
F052371	Metagenome	142	Y
F091307	Metagenome	107	N
F093533	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139557_100006617	F041184	N/A	MASDFRPGTLDIQIWRNDTWQQVFTLLADTTPINLSGATVYIQVRKGCGGTLALTLTNGSGVTIGGASNNQITVNKLVNIEKGNYVYDLQVTFSDTTVKTYLEGDFIVYDDVTKP*
Ga0139557_100006621	F011226	N/A	MAKQIIPVDIWVNGESKTAEFLQVTCINDNYESSATNYWQLFTKVVDAKGVESQGEQVAQGNLTIDGADYIAWGDQPAMAINAWIYNWSADKLNLVILP*
Ga0139557_100006628	F034850	AGG	MEEDLILGKEEEVECFEEEIGHSFPEYISCSVEVLTMLETANPMTREEVEKTQELKKLCMEMLEFSVKSMHGMLFTNDI*
Ga0139557_100006632	F091307	N/A	MKKQVTTNVRIPADWLKVSINDIMIMVTATINDVEDYIDVQVREIHMPGYHCLNILPQYYLSFYELVEQKCIDAFTFKMDSEYDHEYYCDYAL*
Ga0139557_100006633	F093533	N/A	MHYERIEMTLSVKGEVRATAYPLRNHESIERQRKQWYFFYGLKSIMEWEIYISYTSKMQNSSPFKIEKSFPYITKSQHNDTTESRPTDLYCEPVNLAGGLIQTVGKRQSQVL*
Ga0139557_100006639	F052371	N/A	LTNSEELDLERFKLSRTSLPISLLSGALVVDELINGMQKLGVKGDKMPTNADLLIMYKSIMEEYPNIKIGELSLAFDLAAKGKLDIDAETYQNFSMLYLHRILRAFARYGMQKLNEIKPAEDKKWNPRFVTDDEKIETAFDCYKKFRIWDSIIFGVDVFHILHKQGRIIVDAENTYDKVLRSMNDRMFDGSSQDKIDIKNKMKDDDYMENQCKRMAVADYFDKLIK*