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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300011009 Open in IMG/M |
| Scaffold ID | Ga0129318_10000265 Open in IMG/M |
| Source Dataset Name | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6890 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (50.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Chesapeake Bay | |||||||
| Coordinates | Lat. (o) | 39.2454 | Long. (o) | -76.028 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000722 | Metagenome / Metatranscriptome | 922 | Y |
| F008130 | Metagenome | 338 | N |
| F014971 | Metagenome | 258 | Y |
| F021105 | Metagenome | 220 | Y |
| F031092 | Metagenome | 183 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0129318_1000026511 | F014971 | AGGA | MTYEEAIAAYPHDQVNIQVDDVVRPMTPAEYEAFIQRQVTNPQPTAE* |
| Ga0129318_100002652 | F021105 | N/A | MRNPNDEYDRLHDHMTAIARERDHAVRTIDALTKQLEELKDALVLAHEALRREMP* |
| Ga0129318_100002653 | F031092 | N/A | MSTITDELKVLITLCDLLHQVNSLHDFIGKDEIDSRLRWAAKNTANKINHLSNLNG* |
| Ga0129318_100002656 | F000722 | N/A | MADIPYPDSGISQETRETMYPETYSDKYNKVFKTFIDDIFRPNHVPKPEQPDHSILLDELVLMYDAHMTIGGEQNRFNASVIKAAINVIRAL* |
| Ga0129318_100002658 | F008130 | AGG | MTGDKGRCNMADAKTYIYEVYTTHLDSNQMVLVQIFRDPETDKVLHAQIAFKDAIGDSWQTPYQLEKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |