Scaffold Ga0139320_1038694

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0139320_1038694

Scaffold Ga0139320_1038694

Overview

Basic Information
Taxon OID	3300011006 Open in IMG/M
Scaffold ID	Ga0139320_1038694 Open in IMG/M
Source Dataset Name	Rumen fluid microbial communities from healthy moose, Palmer, Alaska - F08
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Ohio State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1408
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Moose Rumen → Rumen Microbial Communities From Healthy Moose, Palmer, Alaska

Source Dataset Sampling Location
Location Name	Palmer, Alaska
Coordinates	Lat. (^o)	61.5997	Long. (^o)	-148.1128	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053657	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139320_10386941	F053657	AGGAG	MKELTSEVYNFLYQGPYEGKLFSHPKNYEENPILKNLVEDREVSSKPKNEKTCDEVFYEYLHTFKSKTNKKYFSLLLKFVLLFRECYDISKTKDSKEEVKKAVTDNLPPEGLPDLCNEFYGEFMEPNNFFGIEEPDEKNEIIEIIQHFCIWLFKNEYTKSKLSLAS*

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