Scaffold Ga0139310_1023238

Overview

Basic Information

• Taxon OID: 3300011002
• Scaffold ID: Ga0139310_1023238
• Source Dataset Name: Rumen microbial communities from healthy moose, Palmer, Alaska - Plant fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Ohio State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2979
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Moose Rumen → Rumen Microbial Communities From Healthy Moose, Palmer, Alaska

Source Dataset Sampling Location

• Location Name: Palmer, Alaska
• Coordinates
  • Lat. (^o): 61.5997
  • Long. (^o): -148.1128

Associated Families

Family	Category	Number of Sequences	3D Structure?
F104224	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0139310_10232382	F104224	N/A	LKGNELNSNLEVIEGSQGKEVSQNAPAVVQFNIAPHSECVLYLQKADEESDIDLNSDLCFDYLPNILLEEKKFNSKKYKLRYNNKPVEVYECIAEHNTGVFFIYKNRDPELRVQVTAKFTKRNNLYLAITSSDLEEGGMKLRKPNGNEFREEGGEDVTITVEPGETGFFGLSAIDSFEKFSYTCQFDYLFTVAKVPAKFMQYSKEEYEEEGEE*