NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0139310_1023238

Scaffold Ga0139310_1023238


Overview

Basic Information
Taxon OID3300011002 Open in IMG/M
Scaffold IDGa0139310_1023238 Open in IMG/M
Source Dataset NameRumen microbial communities from healthy moose, Palmer, Alaska - Plant fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOhio State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2979
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Moose Rumen → Rumen Microbial Communities From Healthy Moose, Palmer, Alaska

Source Dataset Sampling Location
Location NamePalmer, Alaska
CoordinatesLat. (o)61.5997Long. (o)-148.1128Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104224Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0139310_10232382F104224N/ALKGNELNSNLEVIEGSQGKEVSQNAPAVVQFNIAPHSECVLYLQKADEESDIDLNSDLCFDYLPNILLEEKKFNSKKYKLRYNNKPVEVYECIAEHNTGVFFIYKNRDPELRVQVTAKFTKRNNLYLAITSSDLEEGGMKLRKPNGNEFREEGGEDVTITVEPGETGFFGLSAIDSFEKFSYTCQFDYLFTVAKVPAKFMQYSKEEYEEEGEE*

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