Scaffold Ga0138513_100019696

Overview

Basic Information

• Taxon OID: 3300011000
• Scaffold ID: Ga0138513_100019696
• Source Dataset Name: Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 922
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: Ranch near Red Deer, Alberta, Canada
• Coordinates
  • Lat. (^o): 52.172047
  • Long. (^o): -113.738964
  • Depth (m): .15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005536	Metagenome	397	Y
F007604	Metagenome	348	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138513_1000196962	F007604	AGGAG	MMPNDPTRRSALSVALLAHANTGYEVDCWMAGNGQPHGSVRYDTDRAWFTIQGRPAALRELAEALLRCAELTEQTYPAPSPPVVEGVAG*
Ga0138513_1000196963	F005536	AGGGGG	MWDDSPDCPACATGWHTRCRWPDLADDGDGELVERCCDGLLIARRR