Scaffold Ga0138321

Basic Information
Taxon OID	3300010980 Open in IMG/M
Scaffold ID	Ga0138321_10013659 Open in IMG/M
Source Dataset Name	Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 8)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 corn stover (Eukaryote Community Metatranscriptome) (version 8)

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2464
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

2464

Total Scaffold Genes

1 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

1 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Ecosystem

Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Source Dataset Sampling Location
Location Name	USA: Illinois
Coordinates	Lat. (^o)	40.102108	Long. (^o)	-88.227299	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Illinois

Coordinates

Lat. (^o)

40.102108

Long. (^o)

-88.227299

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F013849	Metagenome / Metatranscriptome	267	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0138321_100136591	F013849	N/A	FSLEVEIKEKIIMALIQSFGELEENTKLEINLCLKQYLDSLVHVKKIQEKLVLMKTQSKIFVEFIPNVAKELIEKLLKDLKGNCSDTIKSSTLTLLPSLAIVCSDNVIDQFDMLREGIDKICFKSNENTIILMEFLSSLFLADDTDDDYKGIYSCIIDYLKKGIANSYYKVSTEAIKATGLLFRILSLDEEMNKPFIKNLYNDILPKFKAQDIDPEIKVATSNAIAEFIKSCGKLISENEIKDLFKIYISKTSDELIKPEILKILNDILAKDLRDINLDGAISELENPLLNLLENASQQIQVKILILLDTIFKKYPNALKNSSSNIVDKLLSIKIKEGVLLYIFNIFKDMFPSLNESLIKKIFDYIESKFSENAMDNSFLTSVFDFTRLACSKLQKKDLVAKVNKYSPKIKDLNENMSYYFSIIICFSGEEPSFLDSAIKQIEKLSGNAEGQKQLETVLNIIGDVCENSQTNHDELLSKLEKLKKQLGNRISDSVSEIVGKIGVNNPIGFINKLISQNPDQDSRVSLKEFLYLVEKKNIKITDTDIDGLISWLLNTPNLEVENTNKYVGTCIGLIVKLDKDLVKKYVQLLKDNTGYKKSSLLNGAKEIFKSKIEIPPQILKPLYEQIIEGIKSKERLIKEHSLQAMSFIQYKDKNTLLEYYQNDDIRKIIGESCKTDKAYIKEADFGNGNKIVEDGGKGIRQAALDIQTFMIITYPNKINFDEIIPLLIECLLDTEDYLQQIVYNNIIKLAQIKPTAFSAFGGKLIDILFPVFKSLRIEESKRNFSINVKKIFEELKDVESVTGNPRYNLVVEEINKH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0138321_10013659

Overview

Ecosystem & Geography

Associated Families

Sequences