Scaffold Ga0137575_10001025

Overview

Basic Information

• Taxon OID: 3300010970
• Scaffold ID: Ga0137575_10001025
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1, april 2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: FASTERIS
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5716
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039525	Metagenome	163	Y
F042295	Metagenome	158	Y
F068451	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137575_1000102512	F068451	N/A	MTTITALKIVDQLGLIEDQIEALQEQAEDLKNQLKTLGQGSYAGTMYVTTIKHTPEKKSTAWAAVAKELNAPTDLIAKHTKVTYNILAAETKALSN*
Ga0137575_1000102515	F039525	AGGTGG	MSETRMTPYIQGFDAGVDCVLTEIKRLEKIGPISLEQLVKHLDPQRDQKTAQKPEKTPS*
Ga0137575_100010254	F042295	GAGG	MSYQTAKRKYKDQATEVADEHHGHNCFANGCPMAGGISTGGNWVCAYHHQAQPTEWPRVTEALQDCETIRVAIGEVMKIDMISWGSAVNGYPPKWQEFAALFDDQPELQPTEHEKIRKTKYEYRLRNELAIRAGLAKRKS*