Scaffold Ga0137575_10000228

Overview

Basic Information

• Taxon OID: 3300010970
• Scaffold ID: Ga0137575_10000228
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1, april 2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: FASTERIS
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11878
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060719	Metagenome	132	N
F075869	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137575_1000022812	F075869	N/A	MRNWILIGLAGLTGWYLLGKSQLAAKTKLIFKKLRFANKKFELVFGVQNPTGQTAKVSAITGEVYLGDKLVADFSSFGEQKIAARSESELKIQASPTIGILQLITSKGWLKKGLKYTIKGTGNFDGIVVPFDYKAALI*
Ga0137575_100002283	F060719	N/A	VLKKIKMKPKHLQINIEDEISADKLKLAYTKKASERAMYEQENKFSKSTGQPYQRYYVETKVFYTTANIGSDCNDITFINSGTTNLVIAEVPLLPNQSLRISGNRGEIDTTQYQLTFATPINTGNQLIVIRKLYI*