Scaffold Ga0137575_10000146

Overview

Basic Information

• Taxon OID: 3300010970
• Scaffold ID: Ga0137575_10000146
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1, april 2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: FASTERIS
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14809
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003134	Metagenome / Metatranscriptome	505	Y
F024931	Metagenome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137575_1000014614	F003134	N/A	MTQWSPVWKVTIDGTEYTSAVLANLVVRSGRTNIYEQANAGYCSIQLIDVNQTAVPVNVNSTISIQVKDTAGAFVSIFGGNVVDIGLEVRDVGSTMFTQTYTITALGALARLPKALTNGVLSKEFDGDQIYDILSDVLFNTWAQVAGSLTWGGYTPAGTTWATAENNGLGEIDRPGNYELAARSSERTDVYSLVSALATSGAGYLYESPTGQIGYADSTHRTNYLAANGYVDLDANHARAAGLKIQTRVGDVRNSLTIKYDATSSSEVSASNAASIAEFGTLAQIITTTLHNSADATAQANFYLSLRAQPQPIFSEISFDLTNPEIDNADRDNLINIFMGEAIALTNLPLNMNSGTFQGFVEGWSFQAGYNRLSVTLLLSPLAYSLQAMRWNDVPITETWTSVSPTLEWANATIVA*
Ga0137575_100001462	F024931	GGTGG	VKMQLTQEEEIICMLAAVKLTAESTKGTDNPQRHQKQLGTFEYLVESAEAIGSEWVVAKYFNLPFDPYENKFKVKADVGNAIEVRWTKYVTGQLIIHEYDRPNDIAVLVTGQSPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI*