Scaffold Ga0137675_1002661

Overview

Basic Information

• Taxon OID: 3300010966
• Scaffold ID: Ga0137675_1002661
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: FASTERIS
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1296
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026507	Metagenome	197	N
F078409	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137675_10026611	F078409	AGG	VAFVKNGQIVDEIEKVLEGIMKQPLNSDDVWASIAGKIKGHYLAAQNLPQACPNCARILEPVDFGVDPDSNERMWVTHCCGNWEKFYEKLGPADLI*
Ga0137675_10026612	F026507	GGA	MICEHGADAPKYCAICRHQGLMGKAEGITLAKDSQLNWHNEAVICIQQMARTGRPFTAEDVVNEIGAPTGSGKVIGAAFNTVARSGMIWRCGERPADRKSSHRRMLAVWRGGQVQEQGKLFND*