Scaffold Ga0137675_1000156

Overview

Basic Information

• Taxon OID: 3300010966
• Scaffold ID: Ga0137675_1000156
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: FASTERIS
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6113
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001781	Metagenome / Metatranscriptome	635	Y
F020910	Metagenome / Metatranscriptome	221	Y
F061860	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137675_100015611	F001781	AGG	VKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTIDNILKDESWSPQITQDEMWGHLCEAVEAGQGFSLEYGAEQHQEEVLEWMMNRGYILDPVYED*
Ga0137675_100015614	F061860	GAGG	MNNLTLEPRLQALIDMGEPGTDILHGELKNMMYECEKVLVPLLDNSNEVGSDEDYEDTVQRLYNEGYMDALTAVYQLTYELAFAIADRRENGNA*
Ga0137675_100015617	F020910	AGG	MWTRYTFVCDPDECDALLEFTARDGYGFPNGIVSMRCPCGRTMQYIDVEDLPERIPEPVMDITYTEVVKINTNPYN*