Scaffold Ga0137675_1000013

Overview

Basic Information

• Taxon OID: 3300010966
• Scaffold ID: Ga0137675_1000013
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: FASTERIS
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33077
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (84.48%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048854	Metagenome	147	Y
F050233	Metagenome / Metatranscriptome	145	Y
F053996	Metagenome	140	Y
F057212	Metagenome	136	Y
F074591	Metagenome / Metatranscriptome	119	Y
F086842	Metagenome	110	Y
F095177	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137675_10000131	F057212	AGG	MTTIITTTGNNFATLTADQGITSNLIHPDMHKIVQQDTWLIGVAGSARVCDQLQYSIEYPKPPLDVVRSGNWMKWLVTKVIPLIADTVKDDEMEAEAVLVTHGQSFLISENFSVLTAKPYWAIGSGAELAIGSLTDKQYLVGWNKNHDLSALRAMEAASMHDPNTRGTVDQYRSYTNGKVMRGV*
Ga0137675_100001314	F095177	AGGTGG	MGFVPFGMERASLDQKHKIRKMLEYLGITHPAHQIEFMSALLGKTFDTSKMSKQDFITLRSKIQNIQQTKDKA*
Ga0137675_100001315	F074591	GGAG	MRNWNWTPRAKFLGTLLQAGIVISIIWILFMGTWYALGGN*
Ga0137675_100001319	F086842	AGGA	MNKLEIGQVLTIAMAIDARLGAADENAFRAKVEGWSLALSEAMTFEFARDAIGRHYKSATDSLMPAHLNAMWTAHRSRQHDIDNVRAIGSSPKSQGMPDAVRQQLKNIGLINE*
Ga0137675_100001321	F053996	AGGAG	MKTPSEQLVQTTWMADHKLFANHDAVTPVDWVKVWEVVDNIDSPEFDANQLVMVAVLEFLCGSEMVEVSLDEIANLPELERQAVIDALRLKWSRVELQENL*
Ga0137675_100001322	F048854	AGG	MADEQKENKDNLVALRLNSEQMLAVRQWAHQHNANVSQVIRSAIELMTGAKQ*
Ga0137675_100001329	F050233	N/A	MSILLIAQYAAALTTIAGAVGLFVKWVVVKPIKAYIDTATYPLNPNANGGKSLPDLINTVNRIEARVGDLDYRLNSIEEIVTKPATRTKKTTN*