Scaffold Ga0137675_1000005

Overview

Basic Information

• Taxon OID: 3300010966
• Scaffold ID: Ga0137675_1000005
• Source Dataset Name: Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: FASTERIS
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42252
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (84.72%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water → Freshwater Microbial Communities From The Surface Of The Forest Pond In Jussy, Geneva, Switzerland

Source Dataset Sampling Location

• Location Name: Jussy, Geneva, SWITZERLAND
• Coordinates
  • Lat. (^o): 46.25
  • Long. (^o): 6.28

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F012214	Metagenome	282	Y
F058809	Metagenome	134	N
F103134	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137675_100000510	F058809	N/A	VFDPLTIGLAFKAMQAAYDGISYCCEALSEGKVAIQKVKKATDDIKTITNDAKTIWGFFSGLFGGKAKPLPTAEAKPVVKKKEQYTTHVPNESEIVQQFIGHLGAFFRHHKELTEYVEIKYEEVFASADPDPETILELSVYKNELDQSYVKLSGMMRGAGVPSQLGPLWENYNQIYSKVQAEQQKRKEQIRIRRQIEAYKRERFRQEKVELSMGLFLVLIIVSWLYAVWINSFTEGFSY*
Ga0137675_100000520	F012214	GGA	MSDSYTPVRTPFTQMSFTPDVPSNALSANEYNSGLNVECDVRGIRKVAGEQEILGTITGNVIFLDGGFRGTEWTYIAATREGKWYKITSAGVSNITPGVGANPSVALSGYTDDTNITTSWVGSVFFINDSLRPPMYFLASATEIYIYDSAPDYYVWNYEASIGVTAVTAAFVRNYSSPNVGNILVAGNLTKTSGGITTNYPTTIRWSQAFANTGVPATWSPTLNNVANEQEIPVRGPIIDGFFLGANFYLCSYWDTVVMSPIAYQNSTAPVFGIRLFNQGRGLIHNNCWCNTDSEVYGVDSRDIWVFDGSNFASLGNQKVKNYFFANLNQTYADRMFMVNNTQKNQVELYYPDLTSTGWCNKMLSWRYDLKLWNAPRDVANACMATETPVYSGSAFNYASRTVAYARGNVSGSKIRQTNITNGFAGSAIPALFERTNATLQTAEGPVPYSAKVYVHRILPEVVGTGTINITVGGANSAAQTPLYGQKATVSIVTDNPWVTTQQNTVRTMAVKVESNDATDTWNVPALNWQATITEDAY*
Ga0137675_100000526	F005087	AGGA	MALFIQSANSLVSRVAQWVGAIPSSIGINATAYNSSSGVITTSADPTSLLIVGDFIGNTAIGPYTPVIAISSTTITVSDPDSVWNGATYPTAILKLPTQSSLEVLQCIQLCELKLRTAELPALRSNPYPEDGDFITTDSNGMGPIPRDMNWPILFFQDTPNNQVEPGTPAASYGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGQKYVFTPNPGANVKIKAYYQRIFPFLYSATGDVLNPLVQNNAALASFPEGYLYGTLEAYYDKNKNTTEAQKWAVRFEEAYGLIEDQNFKDKWRGGDQHLTSEFQPRDYRYSFR*
Ga0137675_100000527	F000857	GGA	MELNLNNEEAKVNEDYYTKGNLEAGIEGVLRRNDQLYNEVKSGTWSQTFKTKNLDYKIGAEDGARYVQYTQHNVEAIKQYCKERREFYQTIGTTDNPFFAGTFEAMNLPKSIAHAICSKYFNNRPWELVKTEKKDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK*
Ga0137675_100000530	F003521	AGGA	MKSLVKNIRGYFNRRTKAVDSYKEAHVERRTLVIQNGEAASRLMLNEDFALMFNLYRFSMLERLEEADSDEKRIGNAYYVAGVRDFIDFVEKSEYLAKVALKKVET*
Ga0137675_100000531	F004695	AGGA	MLDKQNIIVESLESPPGNKGIEYQVAHEAYLKMVDYLRLTQAKNTLNRMSDYHYLNIPVSNSTEPVRGIDYISPVVSPGIDYSTAVITKCLMPNGKINFEFERFSEADEPGSRQAAKMALHFLNSKNDSYQFVRDWAQDALLHKSGVVMVSPVREQITQYKEVEGTKDNLRSFEIMAAEKGLSAKRQQMRRIDVDMEGVVQETMMPDETGMPSEPTTEEMNDAIKAHTIYRAKYKLTGYSTNIQVKHVAQHYFVCNPTIPGIRKQDFCGFYDPMTIHEAKSQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMLTTAWLRRDIDNDGEEEIIEVCYSGSYILYIKEVDFIPLAVMVPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFAMQASTPRIGVNPEFIDAEEIQRGVSALFVLDRKFDPTKHIYEFQAMEGNLAYVQDAMQRFDQDTSRMLGMTNPADTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLKDLIYIVWKTMIQYSDDYNMQQLAEAMLPGAGFLDAKSMENFDFIDRNMINIDLALGFLSDENRLTRQQLITQAQAQFAALVAQLDPSVPELFQKVRRPFEDTLYALGVKNCDSYLPTLEEAARMIQSQASKGPSTAEQEVQSKVGLNQAKTKESETVSALNIKKAEDIDMDNFFEMQAMKAGKLSAVQVD*
Ga0137675_100000534	F001059	AGGA	MATYDIEALKADLPTAKELAQFVFDKTNGAISLDLIGKPKDDQYQVAKNALEGKKVPSEFLTGENPYMDKKDEIPEDPLRVMPPRDPNLPDPDAQVHFFGATNMPHPLDPQSDKKVYIEFRKYENGLITYTITGPIEQVPVGEKKNRYGQTVPEKYTWIDPRTPELVMRNADGTFTKEGRGLHTYCVGEKGSGIWSMIDRDMVTVTAKNIANPWA*
Ga0137675_100000536	F103134	GAGG	MSGYGKVINGGKQMSKGNANHINNKLSGFDGENKRREMVAGAVRQAFTVRHLSDQTTNNVSAGGKFKTVKEKDKVQPL*
Ga0137675_100000539	F001915	AGGA	MEWSLADPRFDVEDMVELSDSFFGAEADGIVSRSRAVFRHRLTVACTEQLFNKSREFIAVKRDDSGKLQGFCWFDRGGYTTYSNDEISNAKMHHLDLSLPAKTRIRLVNEMIDQHILWAHTWGVPVVCSTSIRADHDVFMKIHAKRGFTVNGSYAWIRTEKGLECLKSSS*