Scaffold Ga0138308_171045

Overview

Basic Information

• Taxon OID: 3300010965
• Scaffold ID: Ga0138308_171045
• Source Dataset Name: Microbial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1294
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline → Microbial Communities From Lake Cadagno Chemocline, Switzerland.

Source Dataset Sampling Location

• Location Name: Lake Cadagno, Switzerland
• Coordinates
  • Lat. (^o): 46.5499
  • Long. (^o): 8.711

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F036238	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138308_1710451	F000311	N/A	PNQVAFARATWEAELMGLDPEAIDSLTFNIGTGSIEKVSRIRDKFNLTVIKESDYEPTGYLKG*
Ga0138308_1710452	F001043	AGGA	MGDTYQDGFSDGARWAREEITEKLREIDVMDIDSWLLDKLADMIEGGHL*
Ga0138308_1710454	F036238	AGGCGG	MGDRANFAFKQTDTNTIVLYGHWAGYQMLNNLAMAVDKARGRWADESYATRICISQLVGSEWNTETGWGIQVNSISDNEHKIPVINWGTQTFSLHEEAPHSFDSQIRGVKDEPIFTMSLDNFVSKYSAALV*