Scaffold Ga0138308_132413

Overview

Basic Information

• Taxon OID: 3300010965
• Scaffold ID: Ga0138308_132413
• Source Dataset Name: Microbial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2352
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline → Microbial Communities From Lake Cadagno Chemocline, Switzerland.

Source Dataset Sampling Location

• Location Name: Lake Cadagno, Switzerland
• Coordinates
  • Lat. (^o): 46.5499
  • Long. (^o): 8.711

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000714	Metagenome / Metatranscriptome	924	Y
F001043	Metagenome / Metatranscriptome	794	Y
F006984	Metagenome / Metatranscriptome	360	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138308_1324132	F000714	GGA	VSVEHATIAPSTLTKEEPMETETPAVTIPESYNSNLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKTVGVLNSKIDAAKEIICEAYADSQDQDTLREIAEALGIELIKEVEWTASIEVSGTYSYNILENDYDMDLESEITDALFADSNNGNIEVVDQEVCNVREN*
Ga0138308_1324134	F001043	AGGAG	MSDYKDGFDDGYKFAREELMEKLSEIDINDIDSWILDRLSDMIEGGAL*
Ga0138308_1324137	F006984	AGGA	MPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQENHGMGDITANGFPTKIKEVTYSNPVFSFFNIHSYKDKGIIDE