Scaffold Ga0138308_114374

Overview

Basic Information

• Taxon OID: 3300010965
• Scaffold ID: Ga0138308_114374
• Source Dataset Name: Microbial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4438
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline → Microbial Communities From Lake Cadagno Chemocline, Switzerland.

Source Dataset Sampling Location

• Location Name: Lake Cadagno, Switzerland
• Coordinates
  • Lat. (^o): 46.5499
  • Long. (^o): 8.711

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018539	Metagenome	234	Y
F032651	Metagenome / Metatranscriptome	179	Y
F036696	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138308_11437410	F032651	AGGAG	MQVEVVDIEADGFYKDAYTSGNCVKVTLRRGNEVASCRQILIWDEEYAEDCFEDWMECALAGEEGYTYTA*
Ga0138308_1143744	F018539	AGGAG	MSQVYTANIAKAKVIYYKDKETYKIVFAFNVHQKVKDNGDIVHMFPTQAKCAYVSGDINYETLQADKERIISQAKAVMRTDYVEFV*
Ga0138308_1143748	F036696	N/A	MTKALNKRISEAFGKIYDCGDSGLDYMDKHVSLDTVLMEHFYNDTVETLSLADKTKMADMLETIADDMSFDLEDC*