Scaffold Ga0138308_108266

Overview

Basic Information

• Taxon OID: 3300010965
• Scaffold ID: Ga0138308_108266
• Source Dataset Name: Microbial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6819
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline → Microbial Communities From Lake Cadagno Chemocline, Switzerland.

Source Dataset Sampling Location

• Location Name: Lake Cadagno, Switzerland
• Coordinates
  • Lat. (^o): 46.5499
  • Long. (^o): 8.711

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001460	Metagenome / Metatranscriptome	690	Y
F003422	Metagenome / Metatranscriptome	487	Y
F017829	Metagenome / Metatranscriptome	238	Y
F023344	Metagenome / Metatranscriptome	210	Y
F047059	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138308_1082661	F000441	AGGA	MSDRYVNDQLNKAQKLLWSGSLHEQDEAHNIIAKLIKDREDLIENS*
Ga0138308_10826610	F001125	GGCGG	MGDRANFGFTDSKGDTLYLYGHWAGYEMLANLASAVEAARPRWTDESYATRICVSQLIGAQWPQETGWGLSINRLGDNEHKVPVINWQARTFTLYEEDLTTEVFHTSLDAFVSKYSQPVMV*
Ga0138308_10826612	F001043	AGGAG	MSDYKDGFQDGYKFAREEIMEKLAEIDIADIDSWILDRLSEMIEGNQL*
Ga0138308_10826614	F003422	N/A	MTNELISSKYTFICDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPSTQTKEEKMETTTIGSDAFHSPAVEYNPDLLVTYKVIHGYSDPEYTTSKVTSLEWDLHNGRQAQKTSNMLQSNVHRVKDIITEAYADSLDQDTLREIAEALGIELTKEIEWSATIEVSGTFTVDLLEDVDADFESELYDNLYVESQNGNIEIVDTEVTNVREN*
Ga0138308_10826617	F017829	AGG	MANRFRIEIYDANKANDVTIYSEQGIDKEYLTELVFSNIKNFNGKVSAYVYDSLKKKKTTAMFLNEDTVAFAKSKSPALTKSI*
Ga0138308_1082663	F000263	AGG	MDMTTEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEELSEEAMDSMVRTECEGYLDALVALYELTYQLSFAIGARTL*
Ga0138308_1082664	F047059	AGG	MEYMKLHLISLNQDLEDARNNIPIPEDEYFESDAYYTGAIDTMEHILSVASDIMIDNERVY*
Ga0138308_1082665	F001460	GGAGG	MLGYDKKDLDTMINSVHDAKLFYLRSPSDLMDKTQLRTDLEMTVSFLQGLWAEGYFD*
Ga0138308_1082667	F023344	AGGCGG	MEAFTDTVGEHILGAIQVDIEQALFEDWNQSNLDEGEAYAEYRFMQFAPDNLKQSYNEYYGYIEGDEYCL*