Scaffold Ga0138308_107888

Overview

Basic Information

• Taxon OID: 3300010965
• Scaffold ID: Ga0138308_107888
• Source Dataset Name: Microbial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7060
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline → Microbial Communities From Lake Cadagno Chemocline, Switzerland.

Source Dataset Sampling Location

• Location Name: Lake Cadagno, Switzerland
• Coordinates
  • Lat. (^o): 46.5499
  • Long. (^o): 8.711

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006844	Metagenome / Metatranscriptome	363	Y
F009531	Metagenome / Metatranscriptome	316	Y
F034575	Metagenome / Metatranscriptome	174	N
F035304	Metagenome / Metatranscriptome	172	Y
F070104	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0138308_10788810	F034575	GGAGG	MNPTNLDPYLMKQVEMGMDGADILHGHLKTLMLEAEQILDRCIEVEDESGEAMDSMARTEATGYLDALAEVYSLTYAIAFAKEDVKNRREILGG*
Ga0138308_10788814	F006844	N/A	MAKWEIEVIFEPTGDYMNFIYETDNEDEDTIFNEVSNQLSIVPNLVEKNEEE*
Ga0138308_1078884	F009531	N/A	MTKQVAIYEMNYSCSPGGVDCWEATINGYGTSSTASDFKTAGEALNWVLDRHPDEMLELTVVSLPAYEKEFV*
Ga0138308_1078886	F070104	GGA	MLGYNEKDIAIMTDAIEDAIKSGRLADEITDGLEKARDFLDGLWAEGYFD*
Ga0138308_1078889	F035304	N/A	MDLNTFREYIRLHAISLEQDLQNEDGADSIVPYLEGAIHVSKHYLEVLNESN*