Scaffold Ga0138308_106962

Overview

Basic Information

• Taxon OID: 3300010965
• Scaffold ID: Ga0138308_106962
• Source Dataset Name: Microbial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7764
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline → Microbial Communities From Lake Cadagno Chemocline, Switzerland.

Source Dataset Sampling Location

• Location Name: Lake Cadagno, Switzerland
• Coordinates
  • Lat. (^o): 46.5499
  • Long. (^o): 8.711

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000852	Metagenome / Metatranscriptome	860	Y
F006846	Metagenome / Metatranscriptome	363	Y
F020166	Metagenome / Metatranscriptome	225	Y
F021988	Metagenome / Metatranscriptome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138308_10696215	F020166	N/A	MKEPKIMKMDWRSLGYWPVYKDGKLTWEKDPEKDAV*
Ga0138308_10696216	F006846	AGGA	MLFNLVEKYLMRPKRLREAIEAVVHENDELLRILKQHEEEGPTNLTWCEGDTWYGWTYNPKLNRYYFDDIGNKSIMGLWEDQWLREADEYDLGGES*
Ga0138308_10696219	F000852	GGA	MATKREYLKSQGITVGARGRFSGAAKVALQEAAAKGITFTAEVPTGKAK*
Ga0138308_1069627	F021988	AGAAG	MTNSFKKDDGTGTTPPPNGGAAGSVTSREATRKNPKQGMVVDRNKHGIRRETSLIPKAPKKTGRKKI*