Scaffold Ga0138308_101876

Overview

Basic Information

• Taxon OID: 3300010965
• Scaffold ID: Ga0138308_101876
• Source Dataset Name: Microbial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20102
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (70.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline → Microbial Communities From Lake Cadagno Chemocline, Switzerland.

Source Dataset Sampling Location

• Location Name: Lake Cadagno, Switzerland
• Coordinates
  • Lat. (^o): 46.5499
  • Long. (^o): 8.711

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036693	Metagenome / Metatranscriptome	169	Y
F070854	Metagenome / Metatranscriptome	122	N
F075702	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0138308_10187613	F070854	AGGA	VKKFAILWLVLCANVYADVSFGTGESTDCNIAKALAVSDAIERYAEKEFEVRKQHICRERNAEGIECDYVKKTEIESAGTLKKVLSEKVKQKKDVCVVEVKVELDPSRPLAGDIENASYFAYNGQKYPFDVITREPMYVYLFSVYDDKMHMMYPYDGIKSNLLHGKLTLPDGIWWQADIMSNAPESKDTLMAVFTKVKITFRSSMTRDEIYRQISSVPINARRVVYHNFVIKRRT*
Ga0138308_10187622	F036693	GAG	MYNRTMKPRNPIAKDLRTPKYRMRVVGSKVQYIRQPKHRKADHGLGI*
Ga0138308_10187623	F075702	AGGA	MIQIENLTEYQVEMLDHMWSLDSLEEYEEWYDLLDEEDQQLADSLQQMIILAEMDNLMGDCKDAKQLLKKFAL*