Scaffold Ga0138308_101867

Overview

Basic Information

• Taxon OID: 3300010965
• Scaffold ID: Ga0138308_101867
• Source Dataset Name: Microbial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20166
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (74.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline → Microbial Communities From Lake Cadagno Chemocline, Switzerland.

Source Dataset Sampling Location

• Location Name: Lake Cadagno, Switzerland
• Coordinates
  • Lat. (^o): 46.5499
  • Long. (^o): 8.711

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004362	Metagenome / Metatranscriptome	442	Y
F006502	Metagenome / Metatranscriptome	371	Y
F087962	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138308_10186710	F004362	N/A	MELRLKNWAWYVCYGVVAPQPDSTCRSFEKNYVPELGNLYAESEPHYEPDHVDGDLIEQAIKGLPLELRRILKMRYVSHPYASLNQLAHNARTTPHKLESDLHNAKKRLQHELDKKSKSNHLKGMLKV*
Ga0138308_10186712	F006502	GAG	MKPEKTTIMIGLLGDKPKMGHKEEGGLLAEDKSSCPLSTMDKDINRGNMRKAVLTADYGSVEDGEGKCKACEYFNTDMADCGVPKGSGHCEIFDFVCSANNGCDAWEAVGKEEMEEEGEEE*
Ga0138308_10186717	F087962	AGG	MNKAERAQTYLRDEFFVELIEAQLDLYKNMIFGSHEDDVEGRERALVKLRAIEEFHASIQSIADQSEIDKRRIRFF*