Scaffold Ga0138308_100560

Overview

Basic Information

• Taxon OID: 3300010965
• Scaffold ID: Ga0138308_100560
• Source Dataset Name: Microbial communities from Lake Cadagno chemocline, Switzerland. Combined Assembly of Gp0156211, Gp0156621
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Max Planck Institute for Marine Microbiology, Max Planck Institute for Plant Breeding Research
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42046
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Chemocline → Microbial Communities From Lake Cadagno Chemocline, Switzerland.

Source Dataset Sampling Location

• Location Name: Lake Cadagno, Switzerland
• Coordinates
  • Lat. (^o): 46.5499
  • Long. (^o): 8.711

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F003408	Metagenome / Metatranscriptome	488	Y
F004840	Metagenome / Metatranscriptome	421	Y
F030095	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0138308_10056025	F030095	AGG	MAAQKNFQVDENTTFTFEVQYLDEENDPIQLNHHTAKMQVRDTQGGKKLAFTLTEQDGIVITPSLGKISVSLSPERTKKLFYPKSAYDLVIIDPSINITRLLEGYLTLNRAVTI*
Ga0138308_1005603	F004840	GGA	MYKLTCAYDSNTPHWSAEYENEFGAWENFFRFTDWGMANEYSTVNLSTPTGKMYTKVFYRNGMVSVK*
Ga0138308_10056056	F003408	N/A	MQKSESEKRKFLAAIQGVDLEGGEEEENKSFEDVRRKALGITADGSDVVSLQGQFASEAGFGIGAGLGYKKE*
Ga0138308_1005609	F001562	GGA	MKSQLEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGLLEHEDYLAEMENE*