Scaffold Ga0138898_103489

Overview

Basic Information

• Taxon OID: 3300010939
• Scaffold ID: Ga0138898_103489
• Source Dataset Name: Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_1384A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1942
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From North Pond, Atlantic Mid-Ocean Ridge.

Source Dataset Sampling Location

• Location Name: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.81
  • Long. (^o): -46.09
  • Depth (m): 4476

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023365	Metagenome	210	Y
F085808	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138898_1034892	F023365	GGCGG	MANIGEAAEIINASELTLEVGPDTYITVLELHLHVGRPEDRTATTDAGALFTYGKGDNWFTATLLPTTPELGDLTPSYNFLTKIDADGDMPSRAWKLVARDLSGNTKTYALTGILRDYDLRKPREGKAEIDLFVRVTSDTITIT*
Ga0138898_1034894	F085808	AGGA	MTYVALWQVQTSAADGTEALAGDTHTIDFIDSDNKAPSEGAFISDVEVSFRRAVPENEAVDADNNELQDMGIDGFDVTIVGVIGDADNDAVANPVNKISKWLQDGNTTTLFTKGRYGLRLDRSPQWNVVPTSTFGYHIKDCIFKYIGEKKDLVEYTLKLSLGGDIITAI*