Scaffold Ga0137716

Basic Information
Taxon OID	3300010938 Open in IMG/M
Scaffold ID	Ga0137716_10022395 Open in IMG/M
Source Dataset Name	Sediment microbial community from Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA. Combined Assembly of Gp0156111, Gp0156114, Gp0156117
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Sediment microbial community from Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA. Combined Assembly of Gp0156111, Gp0156114, Gp0156117

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Wisconsin, Madison

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8905
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (87.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

8905

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (87.50%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Hot Spring Fe-Si Sediment → Sediment Core Sample Microbial Community From Chocolate Pots Hot Springs, Yellowstone National Park, Wyoming, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Hot Spring Fe-Si Sediment → Sediment Core Sample Microbial Community From Chocolate Pots Hot Springs, Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.7101	Long. (^o)	-110.7413	Alt. (m)	Depth (m)	.01
Location on Map

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Source Dataset Sampling Location

Location Name

Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.7101

Long. (^o)

-110.7413

Alt. (m)

Depth (m)

.01

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F096395	Metagenome / Metatranscriptome	104	Y
F099362	Metagenome / Metatranscriptome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0137716_1002239512	F099362	AGGAG	MPISSPTWSWDRAAAYGLPKLIAQMRDQIAGPPTFEAFRKLGAVVPDKGGSTILFPLRHTAINVQVVGSNPLSITPPNAITDILSAASYDWAELYAQIAIDLRDINKVADAPERAATMMRRYAESAIRDFYKAINTALHGSGTGTESSYGGFGYYLDGGTTGTLGGISKTNTWWRARQKASVGAMSIDKLDSWIVELASDYESPQLFVSTPTVISKIRSLLQAGERVVNSGGSDQEFGALALSYAGVLLVADASCAAGTGYLINVNSIKVYVDSNEPKMEKVSYPAPAQLWNVSMFSQLVAGALADSLRATGIT*
Ga0137716_1002239514	F096395	N/A	LTTERITELLNVIESRQSHYAELRAIAGGALPSIWSDWQHYEPAGSIASDIVAVLEASLIGRVDLRVDPDDATADQLITLLYQRHLHPLVREAVRDYIICGWGGGTMTPWGQARLKPEHSLAGKDWYLRRYELDVRAARQRFGKRRVFDNKSGDVLLVETLQDGKLQVRFGDAIVFSTDWDYEPRLLIGDERPKLVDNSLHGAPIGIIESCKDLFLDHHVLKSMIVRRAAMAGLVQVVSNQLEDPQSADNIARRWDTVLVRDGAAVFPLDQRSLSELMAIQQSIEQAISARSGVSLFQRGISDPSITTATEAALLQSQTNTRLVYLQSIVRDWLNDCVADYRRYLVSLPEDELEYVEFPMAGSTEYFGTGRHYSEVLAGRQVSVALSGYRDVAQRQQEVLSLLPVLQQSGANVRPLLEELIRLSGRDPKLYLE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137716_10022395

Overview

Ecosystem & Geography

Associated Families

Sequences