Scaffold Ga0137716_10002600

Overview

Basic Information

• Taxon OID: 3300010938
• Scaffold ID: Ga0137716_10002600
• Source Dataset Name: Sediment microbial community from Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA. Combined Assembly of Gp0156111, Gp0156114, Gp0156117
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46103
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (51.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Hot Spring Fe-Si Sediment → Sediment Core Sample Microbial Community From Chocolate Pots Hot Springs, Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.7101
  • Long. (^o): -110.7413
  • Depth (m): .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012957	Metagenome	275	Y
F022510	Metagenome / Metatranscriptome	214	Y
F032948	Metagenome / Metatranscriptome	178	N
F034876	Metagenome / Metatranscriptome	173	Y
F043144	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137716_1000260019	F022510	N/A	MLLSQALLDQLWKAGLGGKVIRVPARNQTLQLKMIANEILKEAERLYESKGMTFVMERKGRLEFYRSFGALNLCRRFHLSIAEARNVRRRAYGRWRGWFTECEESLLKAVERTGEAGEGKQNFLRIRRSLRCGGDVAHENRNIVELAEQSIRSVRWR*
Ga0137716_1000260031	F034876	AGGAGG	MRRTRKEKPILQVLLIASLAINTTLGFAVLAKRNRMVQATERKEPVAAPAVITLEGATVEPKGPTAANPASQKVPSVANKTAAPQAMMRRNAPAKMEAVSREREEISFFPKPALYRLSRDTVLTTRRDGARILIPQGTLVRVAGISRDDKALVVSRKGNPDGLIARSSLEQKPDEQAAPDSSAPLQKATANGLRHAADISGPFRLSGGRYGGSIGLGGAQIYVGQNGQISGSLSR*
Ga0137716_1000260035	F032948	AGGAG	MAQLQQQSPGRYVMKDLYLFSCKREILARKLETLPITIPLKPIRPETALRRALSLNLDQKRYTFEESSFEKVNDKPVQIILSREALSNGDIDAGVGKAHVERGRIEVNTIYPELKSSLENGFRFHMDTAITRDLSIVVTKYLTACMGIPVRPKNGEIYFALEKYIPEVLELMTVIDSLGQESTIRISPVVGDEVQKVVERAHDHFRTSVETLMRLTEEISDETHTKTLNTRLKDARDLLEQAAAYEIGLGMELDEVKRNIQHAKSRIAERLLGKPAVNHHPEQSISPAVYAAGSSGQLDLI*
Ga0137716_1000260047	F012957	GGAGG	MDKPFLQTLNLYRSKSALQISPSPELALVFVSLASVIPGMENKMPDKNTKKYLWDKKLTASFNFEGALEVAAAATALAEGKESLVADSKGTLPSWYRDPAKCGRDGNAKIIGFYRPKDPPTGSKVRYFLGITENNKSKDGQKIGIALEYPDLFKISRVMEEAALAILGWRKQIEARCDANGHASPGTSDPHTSDTPAAGAQANAMANGTAQQSDVF*
Ga0137716_100026008	F043144	N/A	MEGSEMKMVSRVRFVREKIGKTYLSFIIRYPRGYLAATVVVGVLSLIVLFAPDASAQLETQVTDALNPLARLLVGPIAKGLAIIGLFAFVGLLYAGRWMGAVSSLVAAVILGLLANIVTAIFQGSNAGGFSLGG*