Basic Information | |
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Taxon OID | 3300010937 Open in IMG/M |
Scaffold ID | Ga0137776_1439105 Open in IMG/M |
Source Dataset Name | Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Minnesota - Twin Cities |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7019 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Dco-Ecs Fumarole Sampling, Azores 2015 |
Source Dataset Sampling Location | ||||||||
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Location Name | Furnas, Sao Miguel | |||||||
Coordinates | Lat. (o) | 37.772747 | Long. (o) | -25.304072 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F018439 | Metagenome / Metatranscriptome | 235 | Y |
F020075 | Metagenome / Metatranscriptome | 226 | Y |
F061232 | Metagenome / Metatranscriptome | 132 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0137776_14391055 | F061232 | N/A | MSMAKFERVNLLRTSLSAGEVHLHSFKGFFCTWHQGRSSNEEVPILIEDAALLGHMTNARLIIELREAKSLPLILGELGPNFLARIVPDVPGDLFDVERGGKETVEHVAEQIGYLSFDFADMDHLGVYETSACWPVMKYHMNGRDPAFLPHSLYNITAYTGAIVGPPAPAEFAEIIRERGVRIEKYPSKMS* |
Ga0137776_14391057 | F018439 | AGGAGG | MARYTVQIGTRSCCGKHRWPLMDIVETLATSGFEYILLEEIAFAGERVSLTLPLETDLRGDKAQSLVDAILHNLSQSLGNNALCFTGNLTVTASAEADEIRAQEGLALIKSKGLSCCLEPVHFSASTRVM* |
Ga0137776_14391058 | F020075 | N/A | MEQYRFEIRFRLAAELKQSYSYIEMVRCLGNSGLQDIVLERVGFLNYKFAPLSLRLPSDMRPLEAESIGHELIRSLGEALESDPRHFSGTLVLCGRGKANEEAAQWTKQMLTRQGFTVFLEVPR* |
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