Scaffold Ga0137784_1365393

Overview

Basic Information

• Taxon OID: 3300010936
• Scaffold ID: Ga0137784_1365393
• Source Dataset Name: Marine microbial communities from surface seawater of North Pacific Subtropical Gyre ? Stn. ALOHA, 15m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1811
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Surface Seawater Of North Pacific Subtropical Gyre - Stn. Aloha, 15M

Source Dataset Sampling Location

• Location Name: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004327	Metagenome / Metatranscriptome	443	Y
F077379	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137784_13653931	F004327	N/A	KFIKIGTKVVTRHGEAKVTGIELCASHSEKYGIGVDKIYLADKDRCVFDMDNGHWSYGYQVEVA*
Ga0137784_13653934	F077379	GGAGG	LLTQKALTKKLVATYCSATNTCFIHKKNKAHNVYTVNSEKIIRNLSAQQLSAFNMLQNTMFANCKNFVQDNALIKMLYNK*