Scaffold Ga0137784_1340978

Overview

Basic Information

• Taxon OID: 3300010936
• Scaffold ID: Ga0137784_1340978
• Source Dataset Name: Marine microbial communities from surface seawater of North Pacific Subtropical Gyre ? Stn. ALOHA, 15m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16728
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (48.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Surface Seawater Of North Pacific Subtropical Gyre - Stn. Aloha, 15M

Source Dataset Sampling Location

• Location Name: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029713	Metagenome	187	Y
F033766	Metagenome	176	Y
F036656	Metagenome / Metatranscriptome	169	Y
F099121	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137784_13409781	F099121	N/A	MNSQEFFKILIGEPPLEVELEIEMKCREVEQLPESIMKAYSFALVKENRMQDYLIMAAMQRITDTELKLLRTEMALHHYKNNLKENKKKVKKTTIFTKIKAMLGIVS*
Ga0137784_13409786	F029713	N/A	MTDNKSNHEAQLKAAKRAEIERIWFAQEATNKELLEAYKALDIKENKEPR*
Ga0137784_13409787	F036656	N/A	MKLCTNQSIPCEFLKGACIFLSDEDEGRYIKDVCVDLEKHSIILIDDDGNGLYWESLRNASIQFQGGR*
Ga0137784_13409789	F033766	AGAAGG	MSDYPYNLTAIATHLRELAGSIAKKLDISEQDAWDLCIEKLESKYLHMTREDNNDSMS*