Scaffold Ga0137844_1149684

Overview

Basic Information

• Taxon OID: 3300010934
• Scaffold ID: Ga0137844_1149684
• Source Dataset Name: Microbial mat microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV9-P3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Hellenic Centre for Marine Research (HCMR)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1270
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool Microbial Mat → Kallisti Limnes Metagenome Study

Source Dataset Sampling Location

• Location Name: Santorini, Greece
• Coordinates
  • Lat. (^o): 36.4542567
  • Long. (^o): 25.40523
  • Depth (m): 229

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F003285	Metagenome / Metatranscriptome	496	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137844_11496842	F001334	GGA	MKFKEYLQINADDSIEQVMNGEWXTKSRTTWKATDNEDNTIEIHNDGHDPELQGESWXVHTNTFAPKAFAYFTKQFXTEVRPAELSYARTRIYPQSPN*
Ga0137844_11496843	F003285	GAG	MPEQESIHNLQTEIQTLKIKDEFRTKELDALMKKLSETSGKLNALSENIGRLLAGQDLHKTSDNEVRDELKXLHTRIGDLHDKCTEMIDRTETRVSSDISLLYKKVDSLEKWRWITIGVATALTFFIGHIVPKLLSL*