Scaffold Ga0137844_1073902

Overview

Basic Information

• Taxon OID: 3300010934
• Scaffold ID: Ga0137844_1073902
• Source Dataset Name: Microbial mat microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV9-P3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Hellenic Centre for Marine Research (HCMR)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 997
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool Microbial Mat → Kallisti Limnes Metagenome Study

Source Dataset Sampling Location

• Location Name: Santorini, Greece
• Coordinates
  • Lat. (^o): 36.4542567
  • Long. (^o): 25.40523
  • Depth (m): 229

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009923	Metagenome	311	Y
F100000	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137844_10739021	F009923	N/A	YTSKLTAQIDKSTTTIALLQVEIENLEQRVYGDIDNIHAIFTDKTGRNSKNYAEAREELVKEMADMASWVGRIEGIVAALRDGSYKLASQAEMQALEEIVRTNTDSIRQFKYDMKDLENTISGGY*
Ga0137844_10739022	F100000	GGAGG	MRWLFIILIXILIFSWASSAKARNDYLGTSYGSCERGRIELYTELRGTDGXXMYQDGDGDPNNSYTSYDDDVNGTVGIRFSWPLQSTCNXXTXXLMRENDRLRXELELLSVCGKYQELELGEXFATVREMCKGVSKKPSLEVTTEEEKPKVTLTVPLR*