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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010934 Open in IMG/M |
| Scaffold ID | Ga0137844_1007087 Open in IMG/M |
| Source Dataset Name | Microbial mat microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV9-P3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Hellenic Centre for Marine Research (HCMR) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5754 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (94.74%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool Microbial Mat → Kallisti Limnes Metagenome Study |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Santorini, Greece | |||||||
| Coordinates | Lat. (o) | 36.4542567 | Long. (o) | 25.40523 | Alt. (m) | Depth (m) | 229 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019393 | Metagenome | 230 | Y |
| F024303 | Metagenome | 206 | N |
| F041144 | Metagenome | 160 | Y |
| F048575 | Metagenome | 148 | N |
| F070575 | Metagenome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0137844_10070871 | F070575 | GAGG | MPTNLWDKEFNRVFREIYRDYLDEGYDKAEAKTLARKDAKEIMKDQLDFVEELYDNTLN |
| Ga0137844_100708711 | F019393 | AGGTGG | MFXELKTYTSVPEFIQAHEGLWHMLGSKYKKLDKETVVIDNTKWKLVKGNMTCLQKK* |
| Ga0137844_100708712 | F048575 | AGGA | MTMLQNSLILDEEYEYEVSVLDLWKAKGIEEPYDAISLALKTFKYPNPNHSDYEIEEHLSELWEERWSEYHV* |
| Ga0137844_10070872 | F024303 | AGGA | MSDNKFTNWLHKELKQQQKEKETIMAKAIKKDGAMILDEAQKKHLLDLFNAGNDFSQSYRESGXKYITAWEIEKXXDLIDXMKXVYGISPKMSEHKHDDGTIMPAHWSDHVWSDDPRAWKRED* |
| Ga0137844_10070878 | F041144 | AGGAG | MLSDAITTVGFALQSYVNTCIHEDTEENRAERVELTLAWSIIKKHLEEKDE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |