Scaffold Ga0137843_1095335

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0137843_1095335

Scaffold Ga0137843_1095335

Overview

Basic Information
Taxon OID	3300010932 Open in IMG/M
Scaffold ID	Ga0137843_1095335 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV7-P1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Hellenic Centre for Marine Research (HCMR)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	513
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool → Kallisti Limnes Metagenome Study

Source Dataset Sampling Location
Location Name	Santorini, Greece
Coordinates	Lat. (^o)	36.45421	Long. (^o)	25.40539	Alt. (m)		Depth (m)	229
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054094	Metagenome	140	Y
F066698	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137843_10953351	F054094	AGGA	METKTNHDYTRRNRFTGESIELTEEEAIKHDQIFYHEVLATLEDKELGTGCSKHWDIMNKHLQWF
Ga0137843_10953352	F066698	N/A	CHTRPTKDRFNKSSKRLKGRNAYLTVDYNDENHSSPFSIFCTTGCQHDWINANIQNIVAQRPITFNRERKLSEQTYHITEGGWVRSDEHLTND*

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