Scaffold Ga0137843_1058387

Overview

Basic Information

• Taxon OID: 3300010932
• Scaffold ID: Ga0137843_1058387
• Source Dataset Name: Freshwater microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV7-P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Hellenic Centre for Marine Research (HCMR)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1382
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool → Kallisti Limnes Metagenome Study

Source Dataset Sampling Location

• Location Name: Santorini, Greece
• Coordinates
  • Lat. (^o): 36.45421
  • Long. (^o): 25.40539
  • Depth (m): 229

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008424	Metagenome / Metatranscriptome	333	Y
F015742	Metagenome / Metatranscriptome	252	Y
F016667	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137843_10583871	F015742	N/A	MDSKKAYEMMQDEMIDRESMYLCTEIERALDRIITYTDMLDANAFNKIKKPAIKLLKEWHL*
Ga0137843_10583873	F008424	N/A	MEKKVNILERLLYLIMICGFCFFCGVFYTFYKIDQRTWNEEILKARDIETRYINYPNKRNYKQDDLERIIYGK*
Ga0137843_10583875	F016667	N/A	MKLNKNLRRVVVTLVLIGAGFVYGKQTGEQEILNRWENRWFESDWYDTRSIEDFLYETDYSIELGE*