Scaffold Ga0137843_1005446

Overview

Basic Information

• Taxon OID: 3300010932
• Scaffold ID: Ga0137843_1005446
• Source Dataset Name: Freshwater microbial communities from the Kallisti Limnes subsea pool, Santorini, Greece - 2-BIOTECH-ROV7-P1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Hellenic Centre for Marine Research (HCMR)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1654
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Subsea Pool → Kallisti Limnes Metagenome Study

Source Dataset Sampling Location

• Location Name: Santorini, Greece
• Coordinates
  • Lat. (^o): 36.45421
  • Long. (^o): 25.40539
  • Depth (m): 229

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062151	Metagenome / Metatranscriptome	131	Y
F092212	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137843_10054461	F092212	N/A	QGASATWENVLGNSQWYDAEYERGTVYLRGYIFSILRKNRVRVTYRYGGENFAGDSEIPSDITDVIIKMTCTEIMNTSFRMDELPTGGMTNTSETKQKWEDDIERCIENRREIFTVA*
Ga0137843_10054463	F062151	GAG	LSSFQYDAATTVIDLLNNNWXAGQTPEINKAWEKRSTGFIDDRRDQIIVTPKSEQVNYFSLYGTDHWHDVTIDLDIRTYQDDERHNDIVKEAIKIITDQIRGGTDYTDLRVISSYTRNQFMRNMFNHILTISIRKTNP*