Scaffold Ga0133913_12767761

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_12767761
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1183
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003807	Metagenome	467	Y
F040626	Metagenome	161	Y
F058146	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_127677612	F003807	N/A	MEQPYLNTDEEKLRSLLSDEAKSINMFDNMQATIRQLKAKQAFRIALLNQLIDNLDEKE*
Ga0133913_127677613	F058146	AGGA	MKLSQLTAKPQLILIELVDDEIIKEFGEAITFHTWDRQPMDVFMKLAGASNKDTSEIISIVRTLILDENGKEILKDDAMLPTNVLMKAIGKVTEVLGK*
Ga0133913_127677614	F040626	N/A	MALILTVDGLGKRYGMLPSEVLERSNTFDLYIMDAAMTFESYHHKKSMNNGREPMPDYTTDELQNMLNKAKGE*