Scaffold Ga0133913_11621986

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_11621986
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1631
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024717	Metagenome	204	Y
F048156	Metagenome / Metatranscriptome	148	N
F052407	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_116219861	F048156	N/A	MNLLKTIIERLNQRVEVANIFDKQFGLCELNANGNEKAWVHYIGNGQAEVVTNFDAKQGTLFWAKRGKVTVTKTDAYKMSGCKQLYVTSFPLTAYAVVRKSHLPCDGDDAQDWLASRIYKLTSGTDPLFKQSIGVINYEVIPSGYINE
Ga0133913_116219862	F024717	N/A	MATPKEISSRIDALFSEWSGGFTPLSEAVKNMRREMYIRIFGIDTGRGQNQAGNFLPTVPYSPAYAKLKAKNGRPPLELTGFLKRSFGTDEGSVFSQGFDTAIYIQADEAGKAAGLQFGVNSGNPKYKTFKGYGIIFQPTKEEQDAMLKLHAELLVEQISNQISKP*
Ga0133913_116219863	F052407	N/A	LSNFKIDIYTMAVPVEIFVYDMTTLKLIDSFFYQSEAVEQFIGRTFKANRRKLDLAFVYESLYDTTKMIPKKGSCTDCGGNLRAVHVCPFVDAIGIELTTDGFNVLSSKSKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLSVSPNQRVNTTVSINIGSKPFATADANDGMIAGRDIAATRYSEELTAMLQNMRLPSDNTCFDCRRNMKYVTALP*