Scaffold Ga0133913_11473542

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_11473542
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1726
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019448	Metagenome	229	Y
F023041	Metagenome	211	Y
F100663	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_114735422	F023041	AGGAG	MERNTPYDTGKVKIGLLYTQPPPECTPESDWIQGVLLGDKRVMDDLLLTTIQSIGLIAFIVIVMLLTGGTSNA*
Ga0133913_114735426	F019448	AGGAG	MTAMTKTQMVNACADYEVAWFFDREPEEQREVFRHIQLHGFEGFKNVPDHNLFASCVDKGIFLMEE*
Ga0133913_114735427	F100663	N/A	MYDYNASFGIKPRLVSAHSANYDETAYDFPDDEDGFVQPTPDDIAVALTEADVETVEVWLDQMPAYTITTLLHCYTPSPLSYTHRDDLCFAEQGIYDMLMEGDASGLISSVTKSYGSVGIVAEVMCYYLQWDVRTPVTFKPALPALLT*