Scaffold Ga0133913_11417699

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_11417699
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1765
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003304	Metagenome	494	N
F010983	Metagenome / Metatranscriptome	296	Y
F041081	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_114176991	F003304	N/A	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMI
Ga0133913_114176992	F041081	GAGG	MIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHYFAKVVNNVTMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDSRQ*
Ga0133913_114176994	F010983	N/A	PKEADETLETYARRVVKDSKESTTKAAEHGTKMHTEMENILLGRAVSRDETLAPYIKTFGEWAEKNVEKTYWCEKGLVGGGYAGRCDAYVKLRGVGDAIIDLKNRKVNPKYDPFYDTDCAQLWAYRNASENPKCACVSVVLASNDATKLETKVWDEDELYQAGIAFCAMQKVWAWVKGYTPPGMKL*