Scaffold Ga0133913_11077830

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_11077830
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2071
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001538	Metagenome / Metatranscriptome	674	Y
F002099	Metagenome / Metatranscriptome	593	Y
F011829	Metagenome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_110778301	F002099	N/A	CHSLGDAVRWLVALVLTLSLQSTGKDLCSVREFYSIAWGIHDPTERHNKMSEWLTKHQYLCKSTDFRVIWNNLSEWAGNADSHQLRGLVVLGYKDALEREKK*
Ga0133913_110778302	F001538	GGA	MIDTIKLFPTVHPSGYPDRHDLAQVKLEKQHEMNKVNEVAKQKQTELQDLEFEIYTKKVVQERLRMEIFQNRKLDIYV*
Ga0133913_110778306	F011829	AGG	MPNIPTPEHAELFAQSVRKWQQVLSLGDWRIEKGIKPAKAAMASVEFTPAARLAVYRLGDFGAEKITPESIDMTCLH