Scaffold Ga0133913_10859956

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10859956
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2358
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003542	Metagenome / Metatranscriptome	480	Y
F031098	Metagenome / Metatranscriptome	183	N
F037728	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_108599561	F037728	N/A	MKRLEITNFSKKVMDIYSDYFEVKYCSSEGNRYLIGLDIRDVVSFKPLEPKHYKMSIDKVTNEDGNYGIWLWDMNGNISYPMSIGIDSLKSLSLFTSFLNNTLKLANNGDFSGDVGNRVDNK*
Ga0133913_108599563	F031098	N/A	MKTYYDIAIHTATNDVVKIKGVSYSQMMRIANDNPTLIKVEILKEYSKKQSKY*
Ga0133913_108599565	F003542	GGA	MEYLLYLYYVIKLKNMNTMLKNVRNPLEFDYDLFDSKIGYDSVNKKYLIRVYDYLVDSIENYEKPTWAGTMRRMLGSNPNNCNPSSYYSSVRRCLKEIDVCYFDTTKRCMVKGRNWDRFTSNEDWSWFIMRTGSCEYSTIIK*