Scaffold Ga0133913_10858264

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10858264
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2361
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010898	Metagenome	297	Y
F032550	Metagenome / Metatranscriptome	179	N
F041609	Metagenome / Metatranscriptome	159	Y
F054611	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_108582641	F032550	N/A	MIVEENVLGWNNIPVKTDEVIYPQAKDDKAPKNYFLGIFCGCRGSGKSYLFTKLLKTLEEKKTYLDEKLIPQRIILISSTAHSDSNKIFKTLKHLDWDNDVIVDYDDDLLKIKMDELKAELTHSKDYKLYKEAWKKFIECKKIEDLKDDELK
Ga0133913_108582642	F054611	N/A	MADIDEERLQTLMEAVNKEHPDLDPYVIWVICVNYLLNEQGLYGDETIAQQLRDQRNKETGYNIRVV*
Ga0133913_108582644	F010898	N/A	MDKINIYINSKNRDSNEKISNFTVRIPQNLLRLERGEHFSLNVNGFYCYNSWFNCIDGFNNEFQIIIKNIDNEVIEIFNYKLNDGNPNVNDVKSNLNGLLLNKVLVTYDKQRNKFIFKRSLPVSTQNYTMYLNIINSEDF*
Ga0133913_108582645	F041609	N/A	MKPIDVPSNGLLEYNNEDGGDSFHYRLANIEQITWFTLTVHNQDNELIPNFSDYILLLQFIRHKTEEGKMEILLNTLVDYVKQIY