Scaffold Ga0133913_10775479

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10775479
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2501
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014976	Metagenome / Metatranscriptome	258	Y
F031764	Metagenome / Metatranscriptome	181	Y
F034567	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_107754791	F014976	N/A	RWKHLKQVADMYEVVGYQYGKNNTYCEVKVWNRDRNENIRYNHVVINQDWY*
Ga0133913_107754794	F031764	N/A	MQKQIQETINKVSTSFPSLFSREDVIKLLADLDTEIQNEAPKSKVNKDDLLVTFRQMLSEKDWDHLVDKDDVELSIGYDNKIEVDRIAINEDYLIDEAVDALEALWDVLEGEED*
Ga0133913_107754796	F034567	GGAG	LINLFNYYDYINHYGNRMFAIAGVKAMPVRYSSILFTGSYDECMERLDPKGLEGSVEDIQKRVAFRR*