Scaffold Ga0133913_10750803

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10750803
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2547
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029418	Metagenome	188	Y
F031359	Metagenome	182	Y
F034908	Metagenome	173	Y
F061801	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_107508031	F031359	AGGA	MVDKKEKQIIVEQIMVTGYVKHGNGRKTKFEFYKNDFEPKDLEGIFNGVGRIYQ*
Ga0133913_107508032	F029418	GGAGG	MTQHQVNEEKKRKFEEDIIEVAVAEYYEYVDVHKRTRSEKDAKMFYDAMRLGIVRGINYATNQYMQSIKNFEESKHENKTDI*
Ga0133913_107508033	F061801	AGGAG	MKTKPIFKSHASPSYKGYDREIYLSEYTPINKEHYRRLRFCAVVSVGINIFLLLVMVMR*
Ga0133913_107508035	F034908	AGGAG	MKKFSVVVEVSMEESKYEEVKTWEVEPSDHVTTLLTEPLRDKGMVVKAYAVETDHSLYDRQKKHQDHLLQADAYNDLEEEIISRSCIGGVCED*