Scaffold Ga0133913_10436967

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10436967
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3455
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F005087	Metagenome / Metatranscriptome	412	Y
F074573	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_104369671	F074573	N/A	NNSVLFLNPDVIQWGSLRELGPNNEVFSSADASLDQYIMEGTLIVRNPAGVGVLDGISPTGAAVTVPRATAQVARYL*
Ga0133913_104369673	F000857	AGGAG	MGLNIENEEAVTNEDYYLSGNMAGGIEGLLIKNNKMFNEVKSGTWSQTFDTPNISYKVGALEGERYVQYTQSNVESIRTHCKEMREFYQEHGTDNPYFAGTFHAMELPKCFAHEITSRYFNNRPWELIKQDKKDKILFYAIVNEYYKDFVCHPSGKIPLPYNPAIPTR*
Ga0133913_104369674	F005087	AGG	MSLFIQSANALVSRIALWVGAIPSTLSITATAIAGNAVLTTSADPRTFVVPGDFIGPSTMLPFSVVLSVDATSITVSDPDTVWSGLTTSVILKLPSQSSMEILTCIQMSELKMRKLEIPGLRSDPYDPITPSILTTDTQGMAPIPQDMNFPVLFFQETQASTLNNLGPWIIYDRIGDREIIRRRMIDQLYIRPFGVPRVIRANFSEVSGRYVFTPNPGNLVVIKAYYQKTFPFLFSPTGNSLAPITQNNDALASFPEGYLYGTLSTYYDKNKNTDEAQKWLGRFDDAYGVIEDQMWRGKWRGGDQHLTSEFQPRSTRYSFK*