Scaffold Ga0133913_10335175

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10335175
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4004
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F011761	Metagenome / Metatranscriptome	287	Y
F040626	Metagenome	161	Y
F058146	Metagenome	135	Y
F065543	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_103351751	F065543	N/A	DGNAQPVDNQQNQNRSNRVTANDLQEQFSKLQQDLARKDQALREKELDGDIQRAMGDKFDSDLLDYALNKVKSNIQWNNDGTYQITDSKGRERYGQDGNPLSIQGLVNEVAQGNPKLLKQSNLNSGSGLRPGQGSFTGASDEAVPDYSRDPAAFNAWANKNGLGKGVGLKGLGVTATVSSASRKVL*
Ga0133913_103351752	F011761	AGGA	MAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVTPTQGQTFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTAAFLDFKVSPANTYYATSADGFDRVLQLGAMEVIGATNTSGTWTSGFTCNSILDLIRLVKQNFKVARMPGTPVIVLDSNGDAQTQGGYTGGQVGSSLNRLLAELTGGAVSQSGGANLSALGNELLSSGKIESVYGCMVMFTTFLQSASRTVVGQASLPVLVGAYMGDSAIFTVMKEGLQIKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINILQES*
Ga0133913_103351753	F002260	AGGA	MSVPYQRISNATVRDIQFYDPAAERRAAALNVDWEPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSLLIKNDQTLIRLDTFGAIQVFYESLVTDVSNMNEVDMQNYDFAVRRCENEWTKALQLMNFYNLYDDSPNGPTTKLEENWTADVDFFNGDRRYF*
Ga0133913_103351757	F058146	AGGA	MKLSQLTAKPQLILIELNDEEIIKEFGEAITFHTWDRQPLDVFMRLASADHSNSGSVIGIVRTLILDEKGKEILKDDAMLPTHVLMKAIGKVTELLGK*
Ga0133913_103351758	F040626	N/A	MALILTIDGLGKRYGMLPSEVLEKSNTFDLYIMDAAMTFESYHHKKSMNNGREPMPDYTTDELQNILNK