Scaffold Ga0133913_10247875

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10247875
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4730
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001092	Metagenome / Metatranscriptome	780	Y
F003266	Metagenome / Metatranscriptome	496	Y
F004759	Metagenome / Metatranscriptome	424	Y
F042750	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1024787511	F004759	AGGAG	MDKKDLAQDKKMIKSAIGKHEKNMHPGKPPTKLAKGGKTNEMMLQYGRGLAKVANQRGG*
Ga0133913_102478753	F003266	GGA	MTQTSETAKSVIDIVSVAAAIGSFLNLLTPIFGLIGAVWTLMRIAEMVTGKPFSELIGRKKPDAKHE*
Ga0133913_102478755	F001092	AGAAG	MATVKPTGSVVKSLKKAGFYGASEPKRLAIINKVTTKPQRIKMVDKLFLAKKAKGTKP*
Ga0133913_102478757	F042750	AGGAGG	VIKVAKHTEDCAVQEDGPCTCGTDEVLEELALEEAGLTAED*