Scaffold Ga0133913_10245478

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10245478
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4756
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F011390	Metagenome	291	Y
F033432	Metagenome	177	Y
F039133	Metagenome	164	N
F048994	Metagenome	147	N
F072322	Metagenome	121	N
F076096	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1024547812	F004583	AGGAG	MKNVRNSDRLREILVSTRHQIVSLKDIQIDLLRSNPKASTEIATQISALEEVYKHQLSLVEMAESTEPKRAGWFSGQIKTKEDRLANIMD*
Ga0133913_1024547813	F076096	AGG	MICYNPEWENPLYWFDKLLTYSDHAELRSFERDLPLIDFLPVNSKFLYRVCKRDVYSMTFETTVNHKKIHIAINSLGIVMTAFPVLVTKADRFQFKYKQYLGAFKQPKDYLPPVITALDFQDVDVEYLEGVA*
Ga0133913_1024547814	F048994	AGGAG	MIGVVKIEFGLMNLYVNDVCVVSTNTMAGIRHAVKRYNLQGYLMGAE*
Ga0133913_102454782	F011390	GAG	MKDMEIKTTNYGVCKVKKHKYQTNGNLALSLIDETGEPVVYITTNIFPMAEDEFCANYYNMGATLWNDIVTSGLFVQTGEKVPSGYCEYPVCKLVKELA*
Ga0133913_102454784	F072322	GGAGG	METVDFVNATEFFDAMELGCGESDQFLSKFTYGDIRTTFTLVSRGTFLSYLKDFIIDCEDVYEKDVVMEALRDYNLSVDVRIKYVNIEA*
Ga0133913_102454785	F039133	AGGA	MNTTDKVIVRFKSRVPKMLYTAHYNGLLLASGRDPIDLGEYYACKYATEWILQDDKNFYTQRGVNK*
Ga0133913_102454787	F033432	AGG	MNYRIKFLSLWSSIMAEERWHKFESQACIPSCKGWNAWAPLCECGKNYCTFKPSGKLEEMQMVIEARPLDF*