Scaffold Ga0133913_10200596

Overview

Basic Information

• Taxon OID: 3300010885
• Scaffold ID: Ga0133913_10200596
• Source Dataset Name: northern Canada Lakes Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5318
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030062	Metagenome / Metatranscriptome	186	Y
F063399	Metagenome	129	Y
F088773	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1020059617	F088773	AGGAG	MKKAIVAVFITLLTTGVMAQVKCESDGRGGMCCWDTKVNGPWKPIGC*
Ga0133913_102005963	F063399	AGGAG	MTTFTTEDRENASPPHIVDSGASVKTLGDYIEQETREEMLRNQMHLLHERVKELEIENAKLKREVEDLMDGRC*
Ga0133913_102005965	F030062	GGAG	MIVTILNMFALFVATCAVLIFAVVFAFFLFIMYACIHIGWKEIKGMPLSELWNRIQK*