Scaffold Ga0133913

Basic Information
Taxon OID	3300010885 Open in IMG/M
Scaffold ID	Ga0133913_10114907 Open in IMG/M
Source Dataset Name	northern Canada Lakes Co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010885 Open in IMG/M

Scaffold ID

Ga0133913_10114907 Open in IMG/M

Source Dataset Name

northern Canada Lakes Co-assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7214
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7214

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (69.23%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010237	Metagenome	306	N
F013988	Metagenome	266	Y
F027779	Metagenome	193	Y
F033421	Metagenome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1011490711	F010237	AGG	MPVPSYTDLFNEGFDDLVTKLETVATLQVVNDPRNIVPPCAFVNIDSIEGFNYNIAKLNFTVQIVTLGPGNLDAQKSLLNMLAKIYALNLGIVGGRPTNVDIGGSTLPAYELDISIQVQTD*
Ga0133913_1011490712	F013988	AGGCGG	MATYTVVEKYLSANFAVLQLLTPSEIQIGQSIVVAGVNATFNGTYTVRALPEFEFIGVDTDGDLLYDTQIPIANQVLYPVTASNVTRSSASGTVTYTVTCSWVTAANLEDWLGIGTATAADAAFLTVCAAACSQFAWRRRMEAGYIDSLTTVPSQDVFLGAQMYGGALYRQRGSMDQFASFQNMGTVPVTGLNGLIRQLLGIDRPQVA*
Ga0133913_101149072	F027779	N/A	MDEWIRQAISYSDEAFYNFGSWGIRNMRGSEELSVHACGRAVDLSFAATDKHPTANRKGMVAFLNIVTANANALGLECVLDYLPKPFGRGYRCDRQAWSKYSKPTIHGAPGGTWCHFEISPAMADSPNLVKQAFQRVFAEIPQ*
Ga0133913_101149078	F033421	GAGG	MADGIETRLEIYGLKEALKELNKIDKSLRREITKDYKRITASLVTDIESAIPLNYPLSGWERRWTLRGSYEVYPWPTEHKVKAYINTKPPKEFRSNTVNLTTFAIKWIGAAASFFDFSTTNAMGKHLTAKYGDSSRVVWRQYEAHKDELNTAMTELVDRVGAATSRNLGAQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0133913_10114907

Overview

Ecosystem & Geography

Associated Families

Sequences