Scaffold Ga0133913_10104311

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0133913_10104311

Scaffold Ga0133913_10104311

Overview

Basic Information
Taxon OID	3300010885 Open in IMG/M
Scaffold ID	Ga0133913_10104311 Open in IMG/M
Source Dataset Name	northern Canada Lakes Co-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7594
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045088	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133913_1010431111	F045088	AGGAGG	VGYRQFTEEQITEFIETAKEMGIGPTLRYLQYPKSYHTAKKWFVERGLDMPTIDTLAKMAGDLRVFYSDKEKLIAAQAVLDRCVEALMQDILDSDGLNKLANAVHKAIQTINLIEGKSTVINENRQKDGQDLAIVDLLNEAKMRNEAMRNKGLIKEGLVKEGLTNEV*

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